PROTEINS OF KNOWN STRUCTURE BY SOLID-STATE NMR

The table below provides information about proteins whose structures have been determined by solid-state NMR, to a resolution sufficient to have resulted in a file deposited at the RCSB Protein Data Bank.

Please help me to keep this table up to date by sending me missing information at: dror.warschawski_at_ibpc.fr

Last database update : 4 October 2011

Unique proteins in database : 25

Number of coordinate files in database : 42

For more membrane protein structures: determined by NMR


Protein	PDB Entry	BMRB Entry	Oligomer Size/State	Production Source	Reconstitution Medium	NMR Method	PubMed Reference
ALIGNABLE SOLUBLE PROTEINS
fd coat protein in filamentous bacteriophage	1NH4	5815	5 kDa/1	Escherichia coli	-	oriented	Zeri et al. (2003)
Pf1 coat protein in filamentous bacteriophage (at various temperatures)	1PJF 1ZN5 2XKM	5877	5 kDa/1	Pseudomonas aeruginosa	-	oriented	Thiriot et al. (2004) Thiriot et al. (2004) Strauss et al. (2011)

MICRO-CRYSTALLINE PROTEINS
Spectrin SH3 domain	1M8M		7 kDa/1	Escherichia coli	-	MAS	Castellani et al. (2002)
Kaliotoxin	1XSW	6351	4 kDa/1	Escherichia coli	-	MAS	Lange et al. (2005)
beta1 immunoglobulin binding domain of protein G (GB1)	2JU6 2JSV 2K0P 2KQ4	15156	6 kDa/1	Escherichia coli	-	MAS	Zhou et al. (2007) Franks et al. (2008) Robustelli et al. (2008) Nieuwkoop et al. (2009)
Crh domain, swapped dimer	2RLZ	5757	19 kDa/2	Escherichia coli	-	MAS	Loquet et al. (2008)
Ubiquitin	2JZZ 2L3Z		9 kDa/1	Escherichia coli	-	MAS	Manolikas et al. (2008) Huber et al. (2011)
MMP-12 (Macrophage metalloelastase)	2K9C 2KRJ	7415	17 kDa/1	Escherichia coli	-	MAS	Balayssac et al. (2008) Bertini et al. (2010)
human alpha-defensin HNP-1	2KHT	16254	3 kDa/1	Escherichia coli	microcrystalised outside the lipid membrane	MAS	Zhang et al. (2009)
alpha-beta crystallin	2KLR	16391	40 kDa/2	Escherichia coli	-	MAS	Jehle et al. (2010)

PROTEINS FORMING FIBRILS
Transthyretin in amyloid fibrils	1RVS		1 kDa/1	synthetic	-	MAS	Jaroniec et al. (2004)
Amyloid protofilaments of beta2-microglobulin fragment	2E8D	10202	10 kDa/4	Escherichia coli	-	MAS	Iwata et al. (2006)
WW domain of CA 150	2NNT		18 kDa/4	Escherichia coli	-	MAS	Ferguson et al. (2006)
Amyloid fibrils of the HET-s (218-289) prion with small molecule Congo Red	2RNM 2KJ3 2LBU	11028 11064	43 kDa/5	Escherichia coli	-	MAS	Wasmer et al. (2008) Van Melckebeke et al. (2010) Schutz et al. (2011)
Fragment of the human islet amyloid polypeptide (hIAPP)	2KIB	20074	6 kDa/8	synthetic	-	MAS	Nielsen et al. (2009)

MEMBRANE PROTEINS IN MEMBRANES
Gramicidin	1MAG		4 kDa/2	synthetic	lipids	oriented	Ketchem et al. (1993)
AchR M2 channel	1CEK		3 kDa/1	Escherichia coli	lipids	oriented	Opella et al. (1999)
alpha-factor receptor M6	1PJD		2 kDa/1	synthetic	lipids	oriented	Valentine et al. (2001)
Influenza M2 channel residues 22-46	1NYJ		11 kDa/4	synthetic	lipids	oriented	Wang et al. (2001)
Influenza M2 channel residues 22-46 with amantadine	2H95		8 kDa/4	synthetic	lipids	oriented	Hu et al. (2007)
Influenza M2 channel residues 22-46 with amantadine	2KAD 2KQT	16020 16612	11 kDa/4	synthetic	lipids	MAS and oriented	Cady et al. (2009) Cady et al. (2010)
Influenza M2 channel residues 22-62	2L0J		20 kDa/4	Escherichia coli	lipids	oriented	Sharma et al. (2010)
fd coat protein	1MZT	5815	5 kDa/1	Escherichia coli	lipids	oriented	Marassi and Opella (2003)
HIV Vpu channel	1PJE 1PI7 1PI8		4 kDa/1	Escherichia coli	lipids	oriented	Park et al. (2003)
Stannin	1ZZA	6715	14 kDa/1	Escherichia coli	SDS	solution and oriented	Buck-Koehntop et al. (2005)
MERFT	2H3O		6 kDa/1	Escherichia coli	bicelles	oriented bicelles	De Angelis et al. (2006)
Protegrin-1	1ZY6		4 kDa/2	synthetic	POPC	MAS	Mani et al. (2006)
Mastoparan (membrane bound rather than transmembrane)	2CZP	10001	2 kDa	Escherichia coli	DPPC:DPPG=4:1	MAS	Todokoro et al. (2006)
human Phospholamban	2KB7 2KYV		30 kDa/5	Escherichia coli	DPC and lipids	solution, oriented and MAS	Traaseth et al. (2009) Verardi et al. (2011)
Pf1 coat protein	2KSJ	5877	5 kDa/1	Pseudomonas aeruginosa	DHPC, bicelles and lipids	solution and oriented	Park et al. (2010)

PROTEINS OF KNOWN STRUCTURE

DETERMINED BY SOLID-STATE NMR